Screening of Organic Substrates for Solid-State Fermentation, Viability and Bioefficacy of Trichoderma harzianum AS12-2, a Biocontrol Strain Against Rice Sheath Blight Disease

The present study was undertaken to find the most suitable organic substrates for the biomass production, viability and efficacy of the biocontrol strain Trichoderma harzianum AS12-2 in the solid-state fermentation system. In total, 13 inexpensive, locally available substrates (agricultural wastes or by-products) were inoculated with the antagonist, and following one month of incubation at room temperature, all colonized substrates were air dried and ground to powder. The shelf life and viability of the Trichoderma strain were assessed as colony-forming units per gram (CFUs g−1) of each substrate on a monthly basis for up to one year at room temperature (25 ± 2 °C) and in the refrigerator (4 °C). In order to find out the effect of the substrate on the bioefficacy of T. harzianum AS12-2, the biocontrol potential of the formulations was evaluated against rice sheath blight disease caused by Rhizoctonia solani. The results showed that the fungus colonized more or less all substrates after one month, although the degree of colonization and conidiation was different among the substrates, being especially high in broom sorghum grain, rice husk, rice straw, rice bran and sugar beet pulp. Analysis of variance (ANOVA) of the population in the substrates in “Month 0” showed that the effect of treatment was significant, and the means were significantly different. The maximum population was recorded for broom sorghum grain and rice straw (6.4 × 1010 and 5.3 × 1010 CFUs g−1, respectively). The population declined in all substrates after one year of incubation at room temperature. This decline was relatively smaller in broom sorghum grain, rice straw and rice husk. On the other hand, the population in the same substrate incubated in the refrigerator was decreased in a mild slope, and the final population was high. In addition, the results of greenhouse assay showed that all bioformulations were effective in controlling the disease, and there were no significant differences among the substrates. According to the results of this study, broom sorghum grain, rice husk, rice straw, sugar beet pulp and cow dung could be recommended as suitable fermentation media for the industrial-scale production of T. harzianum strains

Biological control of rice sheath blight disease with formulation of indigenous Trichoderma strains under paddy field conditions

The effectiveness of indigenous Trichoderma strains in preventing sheath blight disease was evaluated during two growing seasons under paddy field conditions. Broom sorghum seeds were used for mass production of Trichoderma strains. Colonized seeds were ground to powder and mixed with talc and carboxymethyl cellulose. Suspensions were made from the bioformulations and sprayed onto rice plants. Effects of Trichoderma strains on disease incidence and severity as well as yield and other growth parameters were determined and compared with a chemical fungicide and a commercial biofungicide. A combined analysis of variance across two years was performed and a statistically significant effect of year, treatment and their interaction was reported. Results indicate that environmental factors and different biological fungicides had a strong effect on disease development under natural conditions. According to the results, propiconazole and T. harzianum AS12-2 resulted in the least disease severity and incidence. Overall, the efficacy of T. harzianum AS12-2 in reducing sheath blight development was significantly better than other Trichoderma treatments and was comparable to the conventional fungicide

Estimating Root Mean Square Errors in Remotely Sensed Soil Moisture over Continental Scale Domains

Root Mean Square Errors (RMSE) in the soil moisture anomaly time series obtained from the Advanced Scatterometer (ASCAT) and the Advanced Microwave Scanning Radiometer (AMSR-E; using the Land Parameter Retrieval Model) are estimated over a continental scale domain centered on North America, using two methods: triple colocation (RMSETC ) and error propagation through the soil moisture retrieval models (RMSEEP ). In the absence of an established consensus for the climatology of soil moisture over large domains, presenting a RMSE in soil moisture units requires that it be specified relative to a selected reference data set. To avoid the complications that arise from the use of a reference, the RMSE is presented as a fraction of the time series standard deviation (fRMSE). For both sensors, the fRMSETC and fRMSEEP show similar spatial patterns of relatively highlow errors, and the mean fRMSE for each land cover class is consistent with expectations. Triple colocation is also shown to be surprisingly robust to representativity differences between the soil moisture data sets used, and it is believed to accurately estimate the fRMSE in the remotely sensed soil moisture anomaly time series. Comparing the ASCAT and AMSR-E fRMSETC shows that both data sets have very similar accuracy across a range of land cover classes, although the AMSR-E accuracy is more directly related to vegetation cover. In general, both data sets have good skill up to moderate vegetation conditions

Biological control of rice sheath blight disease with formulation of indigenous Trichoderma strains under paddy field conditions

The effectiveness of indigenous Trichoderma strains in preventing sheath blight disease was evaluated during two growing seasons under paddy field conditions. Broom sorghum seeds were used for mass production of Trichoderma strains. Colonized seeds were ground to powder and mixed with talc and carboxymethyl cellulose. Suspensions were made from the bioformulations and sprayed onto rice plants. Effects of Trichoderma strains on disease incidence and severity as well as yield and other growth parameters were determined and compared with a chemical fungicide and a commercial biofungicide. A combined analysis of variance across two years was performed and a statistically significant effect of year, treatment and their interaction was reported. Results indicate that environmental factors and different biological fungicides had a strong effect on disease development under natural conditions. According to the results, propiconazole and T. harzianum AS12-2 resulted in the least disease severity and incidence. Overall, the efficacy of T. harzianum AS12-2 in reducing sheath blight development was significantly better than other Trichoderma treatments and was comparable to the conventional fungicide

Biological Control of Rhizoctonia solani AG1-1A, the Causal Agent of Rice Sheath Blight with Trichoderma Strains

Sheath blight caused by Rhizoctonia solani is one of the most serious rice diseases worldwide. The disease is currently managed only by the excessive application of chemical fungicides which are toxic and not environmentally friendly. Therefore, greater emphasis should be given to biological control as being both safe and effective. Trichoderma species are ubiquitous fungi in the soil and have an antagonistic activity against several soil-borne plant pathogens including R. solani. The present study was undertaken to evaluate the potential of indigenous Trichoderma strains from Mazandaran province, Northern Iran (a Mediterranean region on the southern coast of the Caspian Sea) against R. solani AG1-IA  in vitro, and against sheath blight disease in the glasshouse, in order to find biocontrol isolates for application in the field. More than 200 Trichoderma strains were isolated from the soil, plant debris and the phyllosphere in rice felds. Strains were first screened for their antagonism to R. solani by in vitro antagonism tests including dual culture, antibiosis, the effect of Trichoderma strains on the production and viability of R. solani sclerotia, and hyperparasitism on microscopic slides. According to the in vitro experiments, several strains belonging to T. harzianum, T. virens and T. atroviride showed excellent biocontrol. These potential antagonist strains were further evaluated for their effectiveness in controlling sheath blight under glasshouse conditions. Among the 55 selected strains, seven significantly controlled the disease. T. harzianum AS12-2 was the most effective strain in controlling rice sheath blight, better even than propiconazole, the most commonly used fungicide in Iran

Clarifications on the "Comparison Between SMOS, VUA, ASCAT, and ECMWF Soil Moisture Products Over Four Watersheds in U.S."

In a recent paper, Leroux et al. compared three satellite soil moisture data sets (SMOS, AMSR-E, and ASCAT) and ECMWF forecast soil moisture data to in situ measurements over four watersheds located in the United States. Their conclusions stated that SMOS soil moisture retrievals represent "an improvement [in RMSE] by a factor of 2-3 compared with the other products" and that the ASCAT soil moisture data are "very noisy and unstable." In this clarification, the analysis of Leroux et al. is repeated using a newer version of the ASCAT data and additional metrics are provided. It is shown that the ASCAT retrievals are skillful, although they show some unexpected behavior during summer for two of the watersheds. It is also noted that the improvement of SMOS by a factor of 2-3 mentioned by Leroux et al. is driven by differences in bias and only applies relative to AMSR-E and the ECWMF data in the now obsolete version investigated by Leroux et al

Evaluation of Soil Moisture Retrieval from the ERS and Metop Scatterometers in the Lower Mekong Basin

The natural environment and livelihoods in the Lower Mekong Basin (LMB) are significantly affected by the annual hydrological cycle. Monitoring of soil moisture as a key variable in the hydrological cycle is of great interest in a number of Hydrological and agricultural applications. In this study we evaluated the quality and spatiotemporal variability of the soil moisture product retrieved from C-band scatterometers data across the LMB sub-catchments. The soil moisture retrieval algorithm showed reasonable performance in most areas of the LMB with the exception of a few sub-catchments in the eastern parts of Laos, where the land cover is characterized by dense vegetation. The best performance of the retrieval algorithm was obtained in agricultural regions. Comparison of the available in situ evaporation data in the LMB and the Basin Water Index (BWI), an indicator of the basin soil moisture condition, showed significant negative correlations up to R = −0.85. The inter-annual variation of the calculated BWI was also found corresponding to the reported extreme hydro-meteorological events in the Mekong region. The retrieved soil moisture data show high correlation (up to R = 0.92) with monthly anomalies of precipitation in non-irrigated regions. In general, the seasonal variability of soil moisture in the LMB was well captured by the retrieval method. The results of analysis also showed significant correlation between El Niño events and the monthly BWI anomaly measurements particularly for the month May with the maximum correlation of R = 0.88